MuG - CHi-C Pipeline
stable
Table of Contents
Requirements and Installation
Full Installation
Pipelines
Tools for processing fastq C-HiC files
Architectural Design Record
License
MuG - CHi-C Pipeline
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Index
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Index
C
|
D
|
G
|
H
|
M
|
P
|
R
|
T
|
U
C
chicago() (CHiC.tool.run_chicago.ChicagoTool method)
ChicagoTool (class in CHiC.tool.run_chicago)
D
digest_genome() (CHiC.tool.hicup_tool.hicup method)
G
get_chicago_params() (CHiC.tool.run_chicago.ChicagoTool static method)
get_design_params() (CHiC.tool.makeDesignFiles.makeDesignFilesTool static method)
get_hicup_params() (CHiC.tool.hicup_tool.hicup static method)
H
hicup (class in CHiC.tool.hicup_tool)
hicup_alig_filt() (CHiC.tool.hicup_tool.hicup method)
M
makeDesignFiles() (CHiC.tool.makeDesignFiles.makeDesignFilesTool method)
makeDesignFilesTool (class in CHiC.tool.makeDesignFiles)
P
process_design (class in process_design)
(module)
process_hicup (class in process_hicup)
(module)
process_run_chicago (class in process_run_chicago)
(module)
R
run() (CHiC.tool.hicup_tool.hicup method)
(CHiC.tool.makeDesignFiles.makeDesignFilesTool method)
(CHiC.tool.run_chicago.ChicagoTool method)
(process_design.process_design method)
(process_hicup.process_hicup method)
(process_run_chicago.process_run_chicago method)
T
tool (module)
U
untar_chinput() (CHiC.tool.run_chicago.ChicagoTool static method)
untar_index() (CHiC.tool.hicup_tool.hicup method)
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